Towards Building a Semantic Repository of Bioinformatics Resources

Authors

  • Maria M. Nisheva-Pavlova Faculty of Mathematics and Informatics, Sofia University, Sofia, Bulgaria; Institute of Mathematics and Informatics, Bulgarian Academy of Sciences, Sofia, Bulgaria
  • Peter L. Stanchev Institute of Mathematics and Informatics, Bulgarian Academy of Sciences, Sofia, Bulgaria; Kettering University, Flint, USA
  • Pavel I. Pavlov Faculty of Mathematics and Informatics, Sofia University, Sofia, Bulgaria

DOI:

https://doi.org/10.55630/dipp.2017.7.26

Keywords:

Digital Repository, Metadata, Ontology, Semantic Search, Knowledge Discovery, Bioinformatics

Abstract

The paper presents a work in progress directed to the creation of a semantic digital repository of scholarly resources in the area of bioinformatics. A special attention has been paid to the design of a lightweight subject ontology that will be used for automated conceptual annotation of the dynamically entering new materials and as a knowledge source for intelligent search over the repository. Some issues concerning the implementation of the repository and a suitable tool for search and document retrieval over its resources are discussed as well.

References

Hoehndorf, R., Schofield, P., & Gkoutos, G. (2015). The Role of Ontologies in Biological and Biomedical Research: A Functional Perspective. Briefings in Bioinformatics, 16, 1-12.

Huang, J., et al. (2010). Ontology-Based Knowledge Discovery and Sharing in Bioinformatics and Medical Informatics: A Brief Survey. Proceedings of Seventh International Conference on Fuzzy Systems and Knowledge Discovery FSKD 2010. , pp. 2203–2208. IEEE.

Nisheva-Pavlova, M., & Pavlov, P. (2009). Building a Digital Library with Learning Materials. In S. Mornati, & T. Hedlund (Ed.), Proceedings of the 13th International Conference on Electronic Publishing, “Rethinking Electronic Publishing: Innovation in Communication Paradigms and Technologies" (pp. 471-483). Milan, Italy: Edizioni Nuova Cultura – Roma.

Nisheva-Pavlova, M., Shukerov, D., & Pavlov, P. (2015). Design and Implementation of a Social Semantic Digital Library. Information Services and Use, 35(4), 273–284.

Schuurman, N., & Leszczynski, A. (2008). Ontologies for Bioinformatics. Bioinformatics and Biology Insights, 2, 187–200.

Stanchev, P., Nisheva-Pavlova, M., & Geske, J. (2010). Teaching Materials Repository. Serdica Journal of Computing, 4(3), 371–384.

Whetzel, P., et al. (2006). The MGED Ontology: A Resource for Semantics-based Description of Microarray Experiments. Bioinformatics, 2, 866–873.

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Published

2017-09-10

How to Cite

M. Nisheva-Pavlova, M., L. Stanchev, P., & I. Pavlov, P. (2017). Towards Building a Semantic Repository of Bioinformatics Resources. Digital Presentation and Preservation of Cultural and Scientific Heritage, 7, 259–264. https://doi.org/10.55630/dipp.2017.7.26

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